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|
{ lib
, stdenv
, fetchurl
, fetchFromGitHub
, wrapGAppsHook3
, makeDesktopItem
, copyDesktopItems
, unzip
, xdg-utils
, gtk3
, jdk
, gradle
, perl
, python3
}:
let
versionReplace = {
easybind = {
snapshot = "2.2.1-SNAPSHOT";
pin = "2.2.1-20230117.075740-16";
};
};
jackson-datatype-jsr310 = fetchurl {
url = "https://repo1.maven.org/maven2/com/fasterxml/jackson/datatype/jackson-datatype-jsr310/2.15.3/jackson-datatype-jsr310-2.15.3.jar";
hash = "sha256-vqHXgAnrxOXVSRij967F2p+9CfZiwZGiF//PN+hSfF4=";
};
in
stdenv.mkDerivation rec {
version = "5.12";
pname = "jabref";
src = fetchFromGitHub {
owner = "JabRef";
repo = "jabref";
rev = "v${version}";
hash = "sha256-+ltd9hItmMkEpKzX6TFfFy5fiOkLBK/tQNsh8OVDeoc=";
fetchSubmodules = true;
};
desktopItems = [
(makeDesktopItem {
comment = meta.description;
name = "JabRef";
desktopName = "JabRef";
genericName = "Bibliography manager";
categories = [ "Office" ];
icon = "jabref";
exec = "JabRef %U";
startupWMClass = "org.jabref.gui.JabRefMain";
mimeTypes = [ "text/x-bibtex" ];
})
];
deps = stdenv.mkDerivation {
pname = "${pname}-deps";
inherit src version postPatch;
nativeBuildInputs = [ gradle perl ];
buildPhase = ''
export GRADLE_USER_HOME=$(mktemp -d)
gradle --no-daemon downloadDependencies -Dos.arch=amd64
gradle --no-daemon downloadDependencies -Dos.arch=aarch64
'';
# perl code mavenizes pathes (com.squareup.okio/okio/1.13.0/a9283170b7305c8d92d25aff02a6ab7e45d06cbe/okio-1.13.0.jar -> com/squareup/okio/okio/1.13.0/okio-1.13.0.jar)
installPhase = ''
find $GRADLE_USER_HOME/caches/modules-2/ -type f -regex '.*\.\(jar\|pom\)' \
| perl -pe 's#(.*/([^/]+)/([^/]+)/([^/]+)/[0-9a-f]{30,40}/([^/\s]+))$# ($x = $2) =~ tr|\.|/|; "install -Dm444 $1 \$out/$x/$3/$4/''${\($5 =~ s/-jvm//r)}" #e' \
| sh
mv $out/com/tobiasdiez/easybind/${versionReplace.easybind.pin} \
$out/com/tobiasdiez/easybind/${versionReplace.easybind.snapshot}
# This is used but not cached by Gradle.
cp ${jackson-datatype-jsr310} $out/com/fasterxml/jackson/datatype/jackson-datatype-jsr310/2.15.3/jackson-datatype-jsr310-2.15.3.jar
'';
# Don't move info to share/
forceShare = [ "dummy" ];
outputHashMode = "recursive";
outputHash = "sha256-baP/zNgcc6oYwwbWvT7ontULcKKCw0rTQRkdZMgcWfY=";
};
postPatch = ''
# Pin the version
substituteInPlace build.gradle \
--replace 'com.tobiasdiez:easybind:${versionReplace.easybind.snapshot}' \
'com.tobiasdiez:easybind:${versionReplace.easybind.pin}'
# Disable update check
substituteInPlace src/main/java/org/jabref/preferences/JabRefPreferences.java \
--replace 'VERSION_CHECK_ENABLED, Boolean.TRUE' \
'VERSION_CHECK_ENABLED, Boolean.FALSE'
# Find OpenOffice/LibreOffice binary
substituteInPlace src/main/java/org/jabref/logic/openoffice/OpenOfficePreferences.java \
--replace '/usr' '/run/current-system/sw'
# Don't fetch predatory sources. These source are fetched from online webpages.
sed -i -e '/new PJSource/,/);/c);' src/main/java/org/jabref/logic/journals/predatory/PredatoryJournalListCrawler.java
# Add back downloadDependencies task for deps download which is removed upstream in https://github.com/JabRef/jabref/pull/10326
cat <<EOF >> build.gradle
task downloadDependencies {
description "Pre-downloads *most* dependencies"
doLast {
configurations.getAsMap().each { name, config ->
println "Retrieving dependencies for $name"
try {
config.files
} catch (e) {
// some cannot be resolved, just log them
project.logger.info e.message
}
}
}
}
EOF
'';
preBuild = ''
# Use the local packages from -deps
sed -i -e '/repositories {/a maven { url uri("${deps}") }' \
build.gradle \
settings.gradle
'';
nativeBuildInputs = [
jdk
gradle
wrapGAppsHook3
copyDesktopItems
unzip
];
buildInputs = [
gtk3
python3
];
buildPhase = ''
runHook preBuild
export GRADLE_USER_HOME=$(mktemp -d)
gradle \
--offline \
--no-daemon \
-PprojVersion="${version}" \
-PprojVersionInfo="${version} NixOS" \
-Dorg.gradle.java.home=${jdk} \
assemble
runHook postBuild
'';
dontWrapGApps = true;
installPhase = ''
runHook preInstall
install -dm755 $out/share/java/jabref
install -Dm644 LICENSE $out/share/licenses/jabref/LICENSE
install -Dm644 src/main/resources/icons/jabref.svg $out/share/pixmaps/jabref.svg
# script to support browser extensions
install -Dm755 buildres/linux/jabrefHost.py $out/lib/jabrefHost.py
patchShebangs $out/lib/jabrefHost.py
install -Dm644 buildres/linux/native-messaging-host/firefox/org.jabref.jabref.json $out/lib/mozilla/native-messaging-hosts/org.jabref.jabref.json
sed -i -e "s|/opt/jabref|$out|" $out/lib/mozilla/native-messaging-hosts/org.jabref.jabref.json
# Resources in the jar can't be found, workaround copied from AUR
cp -r build/resources $out/share/java/jabref
tar xf build/distributions/JabRef-${version}.tar -C $out --strip-components=1
# workaround for https://github.com/NixOS/nixpkgs/issues/162064
unzip $out/lib/javafx-web-*-*.jar libjfxwebkit.so -d $out/lib/
DEFAULT_JVM_OPTS=$(sed -n -E "s/^DEFAULT_JVM_OPTS='(.*)'$/\1/p" $out/bin/JabRef | sed -e "s|\$APP_HOME|$out|g" -e 's/"//g')
runHook postInstall
'';
postFixup = ''
rm $out/bin/*
# put this in postFixup because some gappsWrapperArgs are generated in gappsWrapperArgsHook in preFixup
makeWrapper ${jdk}/bin/java $out/bin/JabRef \
"''${gappsWrapperArgs[@]}" \
--suffix PATH : ${lib.makeBinPath [ xdg-utils ]} \
--add-flags "-Djava.library.path=$out/lib/ --patch-module org.jabref=$out/share/java/jabref/resources/main" \
--add-flags "$DEFAULT_JVM_OPTS"
# lowercase alias (for convenience and required for browser extensions)
ln -sf $out/bin/JabRef $out/bin/jabref
'';
meta = with lib; {
description = "Open source bibliography reference manager";
homepage = "https://www.jabref.org";
sourceProvenance = with sourceTypes; [
fromSource
binaryBytecode # source bundles dependencies as jars
binaryNativeCode # source bundles dependencies as jars
];
license = licenses.mit;
platforms = [ "x86_64-linux" "aarch64-linux" ];
maintainers = with maintainers; [ gebner linsui ];
};
}
|
