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{ lib, stdenv, fetchFromGitHub, fetchpatch, cmake, zlib }:
stdenv.mkDerivation rec {
pname = "megahit";
version = "1.2.9";
src = fetchFromGitHub {
owner = "voutcn";
repo = "megahit";
rev = "v${version}";
sha256 = "1r5d9nkdmgjsbrpj43q9hy3s8jwsabaz3ji561v18hy47v58923c";
};
patches = [
# Fix gcc-13 build failure:
# https://github.com/voutcn/megahit/pull/366
(fetchpatch {
name = "gcc-13.patch";
url = "https://github.com/voutcn/megahit/commit/4cb2f793503087163bda8592222f105f27e33e66.patch";
hash = "sha256-b5mhzif+OPcMjmg+BnaUc5CB6Acn/KTBOJEw+WYEhbs=";
})
];
nativeBuildInputs = [ cmake ];
buildInputs = [ zlib ];
cmakeFlags = lib.optionals stdenv.hostPlatform.isStatic [
"-DSTATIC_BUILD=ON"
];
meta = with lib; {
description = "Ultra-fast single-node solution for large and complex metagenomics assembly via succinct de Bruijn graph";
license = licenses.gpl3;
homepage = "https://github.com/voutcn/megahit";
maintainers = with maintainers; [ luispedro ];
platforms = [ "x86_64-linux" ];
};
}
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