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{ stdenv, fetchurl, zlib }:
stdenv.mkDerivation rec {
pname = "samtools";
version = "0.1.19";
src = fetchurl {
url = "mirror://sourceforge/samtools/${pname}-${version}.tar.bz2";
sha256 = "d080c9d356e5f0ad334007e4461cbcee3c4ca97b8a7a5a48c44883cf9dee63d4";
};
patches = [
./samtools-0.1.19-no-curses.patch
];
buildInputs = [ zlib ];
installPhase = ''
mkdir -p $out/bin
mkdir -p $out/share/man
cp samtools $out/bin
cp samtools.1 $out/share/man
'';
meta = with stdenv.lib; {
description = "Tools for manipulating SAM/BAM/CRAM format";
license = licenses.mit;
homepage = http://samtools.sourceforge.net/;
platforms = platforms.unix;
maintainers = [ maintainers.unode ];
};
}
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