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|
{ stdenv
, fetchFromGitHub
, fetchpatch
}:
# This file is responsible for fetching the sage source and adding necessary patches.
# It does not actually build anything, it just copies the patched sources to $out.
# This is done because multiple derivations rely on these sources and they should
# all get the same sources with the same patches applied.
stdenv.mkDerivation rec {
version = "8.6";
name = "sage-src-${version}";
src = fetchFromGitHub {
owner = "sagemath";
repo = "sage";
rev = version;
sha256 = "1vs3pbgbqpg0qnwr018bqsdmm7crgjp310cx8zwh7za3mv1cw5j3";
};
# Patches needed because of particularities of nix or the way this is packaged.
# The goal is to upstream all of them and get rid of this list.
nixPatches = [
# https://trac.sagemath.org/ticket/25358
(fetchpatch {
name = "safe-directory-test-without-patch.patch";
url = "https://git.sagemath.org/sage.git/patch?id2=8bdc326ba57d1bb9664f63cf165a9e9920cc1afc&id=dc673c17555efca611f68398d5013b66e9825463";
sha256 = "1hhannz7xzprijakn2w2d0rhd5zv2zikik9p51i87bas3nc658f7";
})
# Unfortunately inclusion in upstream sage was rejected. Instead the bug was
# fixed in python, but of course not backported to 2.7. So we'll probably
# have to keep this around until 2.7 is deprecated.
# https://trac.sagemath.org/ticket/25316
# https://github.com/python/cpython/pull/7476
./patches/python-5755-hotpatch.patch
# Revert the commit that made the sphinx build fork even in the single thread
# case. For some yet unknown reason, that breaks the docbuild on nix and archlinux.
# See https://groups.google.com/forum/#!msg/sage-packaging/VU4h8IWGFLA/mrmCMocYBwAJ.
# https://trac.sagemath.org/ticket/26608
./patches/revert-sphinx-always-fork.patch
# Make sure py2/py3 tests are only run when their expected context (all "sage"
# tests) are also run. That is necessary to test dochtml individually. See
# https://trac.sagemath.org/ticket/26110 for an upstream discussion.
./patches/Only-test-py2-py3-optional-tests-when-all-of-sage-is.patch
# Fixes a potential race condition which can lead to transient doctest failures.
./patches/fix-ecl-race.patch
];
# Patches needed because of package updates. We could just pin the versions of
# dependencies, but that would lead to rebuilds, confusion and the burdons of
# maintaining multiple versions of dependencies. Instead we try to make sage
# compatible with never dependency versions when possible. All these changes
# should come from or be proposed to upstream. This list will probably never
# be empty since dependencies update all the time.
packageUpgradePatches = let
# Fetch a diff between `base` and `rev` on sage's git server.
# Used to fetch trac tickets by setting the `base` to the last release and the
# `rev` to the last commit of the ticket.
fetchSageDiff = { base, rev, name ? "sage-diff-${base}-${rev}.patch", ...}@args: (
fetchpatch ({
inherit name;
url = "https://git.sagemath.org/sage.git/rawdiff?id2=${base}&id=${rev}";
# We don't care about sage's own build system (which builds all its dependencies).
# Exclude build system changes to avoid conflicts.
excludes = [ "/build/*" ];
} // builtins.removeAttrs args [ "rev" "base" ])
);
in [
# New glpk version has new warnings, filter those out until upstream sage has found a solution
# Should be fixed with glpk > 4.65.
# https://trac.sagemath.org/ticket/24824
./patches/pari-stackwarn.patch # not actually necessary since the pari upgrade, but necessary for the glpk patch to apply
(fetchpatch {
url = "https://salsa.debian.org/science-team/sagemath/raw/58bbba93a807ca2933ca317501d093a1bb4b84db/debian/patches/dt-version-glpk-4.65-ignore-warnings.patch";
sha256 = "0b9293v73wb4x13wv5zwyjgclc01zn16msccfzzi6znswklgvddp";
stripLen = 1;
})
# https://trac.sagemath.org/ticket/26315
./patches/giac-1.5.0.patch
# https://trac.sagemath.org/ticket/26442
(fetchSageDiff {
name = "cypari2-2.0.3.patch";
base = "8.6.rc1";
rev = "cd62d45bcef93fb4f7ed62609a46135e6de07051";
sha256 = "08l2b9w0rn1zrha6188j72f7737xs126gkgmydjd31baa6367np2";
})
# https://trac.sagemath.org/ticket/26949
(fetchpatch {
name = "sphinx-1.8.3-dependency.patch";
url = "https://git.sagemath.org/sage.git/patch?id=d305eda0fedc73fdbe0447b5d6d2b520b8d112c4";
sha256 = "1x3q5j8lq35vlj893gj5gq9fhzs60szm9r9rx6ri79yiy9apabph";
})
# https://trac.sagemath.org/ticket/26451
(fetchpatch {
name = "sphinx-1.8.3.patch";
url = "https://git.sagemath.org/sage.git/patch?id2=0cb494282d7b4cea50aba7f4d100e7932a4c00b1&id=62b989d5ee1d9646db85ea56053cd22e9ffde5ab";
sha256 = "1n5c61mvhalcr2wbp66wzsynwwk59aakvx3xqa5zw9nlkx3rd0h1";
})
# https://trac.sagemath.org/ticket/27061
(fetchpatch {
name = "numpy-1.16-inline-fortran.patch";
url = "https://git.sagemath.org/sage.git/patch?id=a05b6b038e1571ab15464e98f76d1927c0c3fd12";
sha256 = "05yq97pq84xi60wb1p9skrad5h5x770gq98ll4frr7hvvmlwsf58";
})
];
patches = nixPatches ++ packageUpgradePatches;
postPatch = ''
# make sure shebangs etc are fixed, but sage-python23 still works
find . -type f -exec sed \
-e 's/sage-python23/python/g' \
-i {} \;
echo '#!${stdenv.shell}
python "$@"' > build/bin/sage-python23
# Do not use sage-env-config (generated by ./configure).
# Instead variables are set manually.
echo '# do nothing' > src/bin/sage-env-config
'';
configurePhase = "# do nothing";
buildPhase = "# do nothing";
installPhase = ''
cp -r . "$out"
'';
}
|