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{ version, rev, sourceSha256 }:
{ lib, stdenv, fetchFromGitHub, cmake, makeWrapper
, pkg-config, libX11, libuuid, xz, vtk, Cocoa }:
stdenv.mkDerivation rec {
pname = "itk";
inherit version;
itkGenericLabelInterpolatorSrc = fetchFromGitHub {
owner = "InsightSoftwareConsortium";
repo = "ITKGenericLabelInterpolator";
rev = "2f3768110ffe160c00c533a1450a49a16f4452d9";
hash = "sha256-Cm3jg14MMnbr/sP+gqR2Rh25xJjoRvpmY/jP/DKH978=";
};
itkAdaptiveDenoisingSrc = fetchFromGitHub {
owner = "ntustison";
repo = "ITKAdaptiveDenoising";
rev = "24825c8d246e941334f47968553f0ae388851f0c";
hash = "sha256-deJbza36c0Ohf9oKpO2T4po37pkyI+2wCSeGL4r17Go=";
};
src = fetchFromGitHub {
owner = "InsightSoftwareConsortium";
repo = "ITK";
inherit rev;
sha256 = sourceSha256;
};
postPatch = ''
substituteInPlace CMake/ITKSetStandardCompilerFlags.cmake \
--replace "-march=corei7" "" \
--replace "-mtune=native" ""
ln -sr ${itkGenericLabelInterpolatorSrc} Modules/External/ITKGenericLabelInterpolator
ln -sr ${itkAdaptiveDenoisingSrc} Modules/External/ITKAdaptiveDenoising
'';
cmakeFlags = [
"-DBUILD_EXAMPLES=OFF"
"-DBUILD_SHARED_LIBS=ON"
"-DITK_FORBID_DOWNLOADS=ON"
"-DModule_ITKMINC=ON"
"-DModule_ITKIOMINC=ON"
"-DModule_ITKIOTransformMINC=ON"
"-DModule_ITKVtkGlue=ON"
"-DModule_ITKReview=ON"
"-DModule_MGHIO=ON"
"-DModule_AdaptiveDenoising=ON"
"-DModule_GenericLabelInterpolator=ON"
];
nativeBuildInputs = [ cmake xz makeWrapper ];
buildInputs = [ libX11 libuuid vtk ] ++ lib.optionals stdenv.isDarwin [ Cocoa ];
postInstall = ''
wrapProgram "$out/bin/h5c++" --prefix PATH ":" "${pkg-config}/bin"
'';
meta = {
description = "Insight Segmentation and Registration Toolkit";
homepage = "https://www.itk.org/";
license = lib.licenses.asl20;
maintainers = with lib.maintainers; [viric];
};
}
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