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{
lib,
buildPythonPackage,
dm-tree,
fetchFromGitHub,
emcee,
h5netcdf,
matplotlib,
netcdf4,
numba,
numpy,
pandas,
setuptools,
cloudpickle,
pytestCheckHook,
scipy,
packaging,
pythonOlder,
typing-extensions,
xarray,
xarray-einstats,
zarr,
ffmpeg,
h5py,
jaxlib,
torchvision,
jax,
# , pymc3 (circular dependency)
pyro-ppl,
#, pystan (not packaged)
numpyro,
bokeh,
}:
buildPythonPackage rec {
pname = "arviz";
version = "0.18.0";
pyproject = true;
disabled = pythonOlder "3.10";
src = fetchFromGitHub {
owner = "arviz-devs";
repo = "arviz";
rev = "refs/tags/v${version}";
hash = "sha256-SZRqSqChQBSA9/jBXN2ds9hh6TI3qZksHai1j2oVsq0=";
};
build-system = [
packaging
setuptools
];
dependencies = [
dm-tree
h5netcdf
matplotlib
netcdf4
numpy
pandas
scipy
typing-extensions
xarray
xarray-einstats
];
nativeCheckInputs = [
cloudpickle
emcee
ffmpeg
h5py
jax
jaxlib
numba
numpyro
# pymc3 (circular dependency)
pyro-ppl
# pystan (not packaged)
pytestCheckHook
torchvision
zarr
bokeh
];
preCheck = ''
export HOME=$(mktemp -d);
'';
pytestFlagsArray = [ "arviz/tests/base_tests/" ];
disabledTests = [
# Tests require network access
"test_plot_ppc_transposed"
"test_plot_separation"
"test_plot_trace_legend"
"test_cov"
# countourpy is not available at the moment
"test_plot_kde"
"test_plot_kde_2d"
"test_plot_pair"
# Array mismatch
"test_plot_ts"
# The following two tests fail in a common venv-based setup.
# An issue has been opened upstream: https://github.com/arviz-devs/arviz/issues/2282
"test_plot_ppc_discrete"
"test_plot_ppc_discrete_save_animation"
# Assertion error
"test_data_zarr"
"test_plot_forest"
];
pythonImportsCheck = [ "arviz" ];
meta = with lib; {
description = "Library for exploratory analysis of Bayesian models";
homepage = "https://arviz-devs.github.io/arviz/";
changelog = "https://github.com/arviz-devs/arviz/blob/v${version}/CHANGELOG.md";
license = licenses.asl20;
maintainers = with maintainers; [ omnipotententity ];
};
}
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