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{ lib
, buildPythonPackage
, pythonOlder
, fetchFromGitHub
, pytestCheckHook
, future
, numpy
, pillow
, fetchpatch
, scipy
, scikit-learn
, scikitimage
, threadpoolctl
}:
buildPythonPackage rec {
pname = "batchgenerators";
version = "0.21";
format = "setuptools";
disabled = pythonOlder "3.7";
src = fetchFromGitHub {
owner = "MIC-DKFZ";
repo = pname;
rev = "v${version}";
hash = "sha256-q8mBWcy+PkJcfiKtq8P2bnTw56FE1suVS0zUgUEmc5k=";
};
propagatedBuildInputs = [
future
numpy
pillow
scipy
scikit-learn
scikitimage
threadpoolctl
];
checkInputs = [
pytestCheckHook
];
patches = [
# Remove deprecated unittest2, https://github.com/MIC-DKFZ/batchgenerators/pull/78
(fetchpatch {
name = "remove-unittest2.patch";
url = "https://github.com/MIC-DKFZ/batchgenerators/commit/87a9437057df8a7550aa3b3eaf840871cc0d5cef.patch";
sha256 = "sha256-vozBK7g2dLxx9din/R2vU28Mm+LoGAO/BmQlt/ShmEo=";
})
];
postPatch = ''
substituteInPlace setup.py \
--replace '"unittest2",' ""
'';
pythonImportsCheck = [
"batchgenerators"
];
meta = with lib; {
description = "2D and 3D image data augmentation for deep learning";
homepage = "https://github.com/MIC-DKFZ/batchgenerators";
license = licenses.asl20;
maintainers = with maintainers; [ bcdarwin ];
};
}
|
