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{
lib,
stdenv,
buildPythonPackage,
substituteAll,
glibc,
libtiff,
openjpeg,
fetchFromGitHub,
lxml,
numpy,
pytestCheckHook,
pythonOlder,
scikit-image,
setuptools,
}:
buildPythonPackage rec {
pname = "glymur";
version = "0.13.4";
pyproject = true;
disabled = pythonOlder "3.6";
src = fetchFromGitHub {
owner = "quintusdias";
repo = "glymur";
rev = "refs/tags/v${version}";
hash = "sha256-RzRZuSNvlUrB+J93a1ob7dDMacZB082JwVHQ9Fce2JA=";
};
patches = [
(substituteAll {
src = ./set-lib-paths.patch;
openjp2_lib = "${lib.getLib openjpeg}/lib/libopenjp2${stdenv.hostPlatform.extensions.sharedLibrary}";
tiff_lib = "${lib.getLib libtiff}/lib/libtiff${stdenv.hostPlatform.extensions.sharedLibrary}";
})
];
postPatch = lib.optionalString (!stdenv.hostPlatform.isDarwin) ''
substituteInPlace glymur/lib/tiff.py \
--replace-fail "glymur_config('c')" "ctypes.CDLL('${lib.getLib glibc}/lib/libc.so.6')"
'';
__propagatedImpureHostDeps = lib.optional stdenv.hostPlatform.isDarwin "/usr/lib/libc.dylib";
build-system = [ setuptools ];
dependencies = [
lxml
numpy
];
nativeCheckInputs = [
pytestCheckHook
scikit-image
];
preCheck = ''
export PATH="$out/bin:$PATH"
'';
disabledTestPaths = [
# this test involves glymur's different ways of finding the openjpeg path on
# fsh systems by reading an .rc file and such, and is obviated by the patch
"tests/test_config.py"
];
pythonImportsCheck = [ "glymur" ];
meta = {
description = "Tools for accessing JPEG2000 files";
homepage = "https://github.com/quintusdias/glymur";
changelog = "https://github.com/quintusdias/glymur/blob/${src.rev}/CHANGES.txt";
license = lib.licenses.mit;
maintainers = with lib.maintainers; [ tomasajt ];
};
}
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