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|
{ lib
, fetchFromGitHub
, buildPythonPackage
, cmake
, setuptools
, boost
, eigen
, gmp
, cgal # see https://github.com/NixOS/nixpkgs/pull/94875 about cgal
, mpfr
, tbb
, numpy
, cython
, pybind11
, matplotlib
, scipy
, pytest
, enableTBB ? false
}:
buildPythonPackage rec {
pname = "gudhi";
version = "3.9.0";
pyproject = true;
src = fetchFromGitHub {
owner = "GUDHI";
repo = "gudhi-devel";
rev = "tags/gudhi-release-${version}";
fetchSubmodules = true;
hash = "sha256-VL6RIPe8a2/cUHnHOql9e9EUMBB9QU311kMCaMZTbGI=";
};
nativeBuildInputs = [ cmake numpy cython pybind11 matplotlib setuptools ];
buildInputs = [ boost eigen gmp cgal mpfr ]
++ lib.optionals enableTBB [ tbb ];
propagatedBuildInputs = [ numpy scipy ];
nativeCheckInputs = [ pytest ];
cmakeFlags = [
(lib.cmakeBool "WITH_GUDHI_PYTHON" true)
(lib.cmakeFeature "Python_ADDITIONAL_VERSIONS" "3")
];
prePatch = ''
substituteInPlace src/python/CMakeLists.txt \
--replace '"''${GUDHI_PYTHON_PATH_ENV}"' ""
'';
preBuild = ''
cd src/python
'';
checkPhase = ''
runHook preCheck
rm -r gudhi
ctest --output-on-failure
runHook postCheck
'';
pythonImportsCheck = [ "gudhi" "gudhi.hera" "gudhi.point_cloud" "gudhi.clustering" ];
meta = {
description = "Library for Computational Topology and Topological Data Analysis (TDA)";
homepage = "https://gudhi.inria.fr/python/latest/";
downloadPage = "https://github.com/GUDHI/gudhi-devel";
license = with lib.licenses; [ mit gpl3 ];
maintainers = with lib.maintainers; [ yl3dy ];
};
}
|
