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{ lib
, buildPythonPackage
, fetchPypi
, pythonAtLeast
, pythonOlder
, hatchling
, hatch-vcs
, numpy
, packaging
, importlib-resources
, pydicom
, pillow
, h5py
, scipy
, git
, pytest-doctestplus
, pytest-httpserver
, pytest-xdist
, pytest7CheckHook
}:
buildPythonPackage rec {
pname = "nibabel";
version = "5.2.1";
pyproject = true;
disabled = pythonOlder "3.8";
src = fetchPypi {
inherit pname version;
hash = "sha256-tsgLLnKOS8K2XxFC2bjSKHqRAqi/hHfhFe8NgzRVmXU=";
};
nativeBuildInputs = [
hatchling
hatch-vcs
];
propagatedBuildInputs = [
numpy
packaging
] ++ lib.optionals (pythonOlder "3.9") [
importlib-resources
];
passthru.optional-dependencies = rec {
all = dicom
++ dicomfs
++ minc2
++ spm
++ zstd;
dicom = [
pydicom
];
dicomfs = [
pillow
] ++ dicom;
minc2 = [
h5py
];
spm = [
scipy
];
zstd = [
# TODO: pyzstd
];
};
nativeCheckInputs = [
git
pytest-doctestplus
pytest-httpserver
pytest-xdist
pytest7CheckHook
] ++ passthru.optional-dependencies.all;
preCheck = ''
export PATH=$out/bin:$PATH
'';
disabledTestPaths = lib.optionals (pythonAtLeast "3.12") [
# uses distutils
"nisext/tests/test_sexts.py"
];
meta = with lib; {
homepage = "https://nipy.org/nibabel";
changelog = "https://github.com/nipy/nibabel/blob/${version}/Changelog";
description = "Access a multitude of neuroimaging data formats";
license = licenses.mit;
maintainers = with maintainers; [ ashgillman ];
};
}
|
