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{
lib,
buildPythonPackage,
fetchPypi,
setuptools,
formulaic,
click,
num2words,
numpy,
scipy,
pandas,
nibabel,
bids-validator,
sqlalchemy,
pytestCheckHook,
versioneer,
pythonRelaxDepsHook,
}:
buildPythonPackage rec {
pname = "pybids";
version = "0.16.5";
pyproject = true;
src = fetchPypi {
inherit pname version;
hash = "sha256-5MAp5CYlOh1WxsXOE/LHVNm/K4VGFaLKWaaKYwKjQIM=";
};
pythonRelaxDeps = [
"formulaic"
"sqlalchemy"
];
nativeBuildInputs = [
pythonRelaxDepsHook
setuptools
versioneer
] ++ versioneer.optional-dependencies.toml;
propagatedBuildInputs = [
bids-validator
click
formulaic
nibabel
num2words
numpy
pandas
scipy
sqlalchemy
];
pythonImportsCheck = [ "bids" ];
nativeCheckInputs = [ pytestCheckHook ];
disabledTests = [
# Test looks for missing data
"test_config_filename"
# Regression associated with formulaic >= 0.6.0
# (see https://github.com/bids-standard/pybids/issues/1000)
"test_split"
# AssertionError, TypeError
"test_run_variable_collection_bad_length_to_df_all_dense_var"
"test_extension_initial_dot"
"test_to_df"
];
meta = with lib; {
description = "Python tools for querying and manipulating BIDS datasets";
homepage = "https://github.com/bids-standard/pybids";
changelog = "https://github.com/bids-standard/pybids/blob/${version}/CHANGELOG.rst";
license = licenses.mit;
maintainers = with maintainers; [ ];
mainProgram = "pybids";
};
}
|
