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{
stdenv,
lib,
buildPythonPackage,
fetchFromGitHub,
pytestCheckHook,
pythonOlder,
deprecated,
humanize,
matplotlib,
nibabel,
numpy,
parameterized,
scipy,
simpleitk,
torch,
tqdm,
typer,
}:
buildPythonPackage rec {
pname = "torchio";
version = "0.19.6";
pyproject = true;
disabled = pythonOlder "3.8";
src = fetchFromGitHub {
owner = "fepegar";
repo = "torchio";
rev = "refs/tags/v${version}";
hash = "sha256-FlsjDgthXDGVjj4L0Yw+8UzBROw9jiM4Z+qi67D5ygU=";
};
propagatedBuildInputs = [
deprecated
humanize
nibabel
numpy
scipy
simpleitk
torch
tqdm
typer
];
nativeCheckInputs = [
pytestCheckHook
matplotlib
parameterized
];
disabledTests =
[
# tries to download models:
"test_load_all"
]
++ lib.optionals stdenv.hostPlatform.isAarch64 [
# RuntimeError: DataLoader worker (pid(s) <...>) exited unexpectedly
"test_queue_multiprocessing"
];
pythonImportsCheck = [
"torchio"
"torchio.data"
];
meta = with lib; {
description = "Medical imaging toolkit for deep learning";
homepage = "https://torchio.readthedocs.io";
license = licenses.asl20;
maintainers = [ maintainers.bcdarwin ];
};
}
|
