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{ stdenv
, lib
, buildPythonPackage
, fetchFromGitHub
, pytestCheckHook
, pythonOlder
, deprecated
, humanize
, matplotlib
, nibabel
, numpy
, parameterized
, scipy
, simpleitk
, torch
, tqdm
, typer
}:
buildPythonPackage rec {
pname = "torchio";
version = "0.19.5";
pyproject = true;
disabled = pythonOlder "3.8";
src = fetchFromGitHub {
owner = "fepegar";
repo = "torchio";
rev = "refs/tags/v${version}";
hash = "sha256-RqKJStUZhnSmsifn3WjYLfmRkkme+GOe6dp0E0MW9tE=";
};
propagatedBuildInputs = [
deprecated
humanize
nibabel
numpy
scipy
simpleitk
torch
tqdm
typer
] ++ typer.passthru.optional-dependencies.all;
nativeCheckInputs = [ pytestCheckHook matplotlib parameterized ];
disabledTests = [
# tries to download models:
"test_load_all"
] ++ lib.optionals stdenv.isAarch64 [
# RuntimeError: DataLoader worker (pid(s) <...>) exited unexpectedly
"test_queue_multiprocessing"
];
pythonImportsCheck = [
"torchio"
"torchio.data"
];
meta = with lib; {
description = "Medical imaging toolkit for deep learning";
homepage = "https://torchio.readthedocs.io";
license = licenses.asl20;
maintainers = [ maintainers.bcdarwin ];
};
}
|
