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2024-05-07Merge pull request #309607 from alyaeanyx/qalculate-5.1.0Doron Behar2-4/+4
{libqalculate, qalculate-gtk, qalculate-qt}: 5.0.0 -> 5.1.0
2024-05-07Merge pull request #309548 from Tom-Hubrecht/sagemath-deps7c6f434c1-0/+5
sage: Add as passthru.tests to critical dependencies
2024-05-06sage: Add as passthru.tests to critical dependenciesTom Hubrecht1-0/+5
2024-05-06{libqalculate, qalculate-gtk, qalculate-qt}: 5.0.0 -> 5.1.0alyaeanyx2-4/+4
2024-05-06Merge pull request #309432 from r-ryantm/auto-update/messer-slimNick Cao1-2/+2
messer-slim: 4.2.1 -> 4.2.2
2024-05-06Merge pull request #308676 from natsukium/dssp/updateOTABI Tomoya1-22/+3
dssp: 4.4.5 -> 4.4.7, libcifpp: 7.0.3 -> 7.0.4
2024-05-06messer-slim: 4.2.1 -> 4.2.2R. Ryantm1-2/+2
2024-05-05Merge pull request #309136 from TomaSajt/getdpNick Cao1-1/+1
getdp: fix hash
2024-05-05Merge pull request #309230 from r-ryantm/auto-update/eigenmathNick Cao1-3/+3
eigenmath: 0-unstable-2024-04-26 -> 0-unstable-2024-05-03
2024-05-05eigenmath: 0-unstable-2024-04-26 -> 0-unstable-2024-05-03R. Ryantm1-3/+3
2024-05-05getdp: fix hashTomaSajt1-1/+1
2024-05-04Merge pull request #307629 from r-ryantm/auto-update/gretlWeijia Wang1-2/+2
gretl: 2023c -> 2024a
2024-05-04Merge pull request #306674 from r-ryantm/auto-update/jbrowseWeijia Wang1-2/+2
jbrowse: 2.5.0 -> 2.11.0
2024-05-04Merge pull request #305759 from r-ryantm/auto-update/rinkWeijia Wang1-5/+5
rink: 0.7.0 -> 0.8.0
2024-05-03Merge #306080: staging-next 2024-04-22Vladimír Čunát24-47/+47
2024-05-03Merge pull request #308403 from r-ryantm/auto-update/eprover7c6f434c1-2/+2
eprover: 3.0.03 -> 3.1
2024-05-03R: apply patch for CVE-2024-27322Thomas Gerbet1-1/+7
https://hiddenlayer.com/research/r-bitrary-code-execution/ Patch has been identified by checking the SCM logs. I was not able to find another part of the patch. Fedora 39 went the same way in https://src.fedoraproject.org/rpms/R/c/b1a4e124f24f03916877bc116c1f9e89dd6c34a5?branch=f39 See also https://github.com/spack/spack/issues/43932
2024-05-03dssp: 4.4.5 -> 4.4.7natsukium1-22/+3
Diff: https://github.com/PDB-REDO/dssp/compare/refs/tags/v4.4.5...v4.4.7 Changelog: https://github.com/PDB-REDO/libcifpp/releases/tag/refs/tags/v4.4.7
2024-05-02Merge master into staging-nextgithub-actions[bot]4-152/+15
2024-05-02digital: fix desktop item and copy icons (#305171)Pixis1-6/+15
* digital: refactor desktopItem fix desktopName change name, exec and icon to pname * digital: refactor installPhase copy icons run pre and post install hooks (we need postInstall to actually run copyDesktopItems)
2024-05-02treewide: remove unreferenced patch files (#308127)Peder Bergebakken Sundt3-146/+0
Found with `fd \\.patch$ pkgs/ -x bash -c 'rg -F "{/}" pkgs/ -q || echo {}'`
2024-05-02Merge branch 'master' into staging-nextVladimír Čunát6-51/+77
2024-05-02Merge pull request #308244 from r-ryantm/auto-update/gtkwaveWeijia Wang1-2/+2
gtkwave: 3.3.118 -> 3.3.119
2024-05-02eprover: 3.0.03 -> 3.1R. Ryantm1-2/+2
2024-05-01Merge pull request #305305 from pmiddend/update-crystfel-to-0.11.0Sandro3-25/+70
crystfel: 0.10.2 -> 0.11.0
2024-05-01last: 1542 -> 1543 (#307730)R. RyanTM1-2/+2
2024-05-01Merge pull request #308122 from guitargeek/root_63006Dmitry Kalinkin1-22/+3
root: 6.30.04 -> 6.30.06
2024-05-01Merge master into staging-nextgithub-actions[bot]2-38/+2
2024-05-01Merge pull request #308259 from r-ryantm/auto-update/igvWeijia Wang1-2/+2
igv: 2.17.3 -> 2.17.4
2024-05-01Merge pull request #308004 from TomaSajt/scotchAleksana1-36/+0
scotch: use fetchFromGitLab, format and move to pkgs/by-name
2024-05-01root: don't do anything specific for Python 2Jonas Rembser1-1/+0
Python 2 support is deprecated in ROOT 6.30 and will be removed from 6.32, due to release in May: https://github.com/root-project/root/pull/13948
2024-05-01maintainers: add guitargeekJonas Rembser1-1/+1
2024-05-01root: remove the hack that disables the splash screen by defaultJonas Rembser1-3/+0
Remove the hack that disables the splash screen by default, as this has already been done in ROOT itself some time ago: https://github.com/root-project/root/pull/4187
2024-05-01root: remove some explicit disabling of compiler warnings on clangJonas Rembser1-3/+0
Remove some explicit disabling of compiler warnings on clang. There is no need for that: we saw the warnings on our own CI and made sure to either fix or disable them.
2024-05-01root: remove deprecated build flagsJonas Rembser1-12/+0
Remove several deprecated or removed build options. See https://github.com/root-project/root/blob/v6-30-00-patches/cmake/modules/RootBuildOptions.cmake
2024-05-01root: 6.30.04 -> 6.30.06Jonas Rembser1-2/+2
2024-05-01igv: 2.17.3 -> 2.17.4R. Ryantm1-2/+2
2024-05-01gtkwave: 3.3.118 -> 3.3.119R. Ryantm1-2/+2
2024-05-01Merge branch 'master' into staging-nextK9002-17/+58
2024-05-01Merge pull request #305464 from natsukium/pymol/updateOTABI Tomoya1-10/+52
pymol: 2.5.0 -> 3.0.0
2024-05-01pymol: remove no longer needed `disableHardening`samlich1-1/+0
2024-05-01pymol: add natsukium as maintainernatsukium1-1/+1
2024-05-01pymol: enable testsnatsukium1-0/+36
2024-04-30scotch: move to pkgs/by-nameTomaSajt1-36/+0
2024-04-30Merge pull request #307843 from NickCao/seqtkNick Cao1-7/+6
seqtk: fix cross compilation, drop custom installPhase
2024-04-30Merge master into staging-nextgithub-actions[bot]2-3/+3
2024-04-30Merge pull request #307686 from r-ryantm/auto-update/xnec2cWeijia Wang1-2/+2
xnec2c: 4.4.12 -> 4.4.16
2024-04-30Merge pull request #307745 from OPNA2608/fix/stableVersion/pkgs-applicationséclairevoyant1-1/+1
pkgs/applications: Fix some unstableGitUpdater users
2024-04-30Merge branch 'master' into staging-nextWeijia Wang1-2/+2
2024-04-30eigenmath: unstable-2024-04-26 -> 0-unstable-2024-04-26OPNA26081-1/+1
generated by cgit-pink 1.4.1 (git 2.36.1) at 2024-08-16 10:59:20 +0000