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2024-02-20octopus-caller: fix `gcc-13` build failure (drop `-Werror`)Sergei Trofimovich1-4/+11
2024-02-14last: 1540 -> 1541R. Ryantm1-2/+2
2024-02-14Merge pull request #287721 from trofi/megahit-gcc-13-fixkirillrdy1-1/+11
2024-02-14Merge pull request #287985 from trofi/svaba-gcc-13-fixkirillrdy1-0/+7
2024-02-11Merge pull request #286906 from ashgillman/masterNick Cao2-19/+8
2024-02-11svaba: fix `gcc-13` build failureSergei Trofimovich1-0/+7
2024-02-10megahit: fir `gcc-13` build failureSergei Trofimovich1-1/+11
2024-02-08hh-suite: fix build on GCC 13Manuel Frischknecht1-0/+10
2024-02-07dcm2niix: 1.0.20211006 -> 1.0.20230411Ashley Gillman2-19/+8
2024-02-06last: 1519 -> 1540R. Ryantm1-2/+2
2024-02-04Merge pull request #285426 from r-ryantm/auto-update/seqkitRobert Scott1-3/+3
2024-02-04Merge pull request #281847 from r-ryantm/auto-update/eggnog-mapperWeijia Wang1-2/+2
2024-02-04Merge pull request #281665 from r-ryantm/auto-update/bowtie2Weijia Wang1-2/+2
2024-02-01igv: use jdk17 instead of jdk11 (#285521)Rolf Schröder1-3/+8
2024-02-01seqkit: 2.6.1 -> 2.7.0R. Ryantm1-3/+3
2024-01-31Merge pull request #222817 from SuperSandro2000/python-sitePackagesPeder Bergebakken Sundt1-2/+2
2024-01-30treewide: replace `lib/${python.libPrefix}/site-packages` with its shorthand ...Sandro Jäckel1-2/+2
2024-01-30Merge pull request #284607 from dotlambda/deeptools-fixSandro1-8/+28
2024-01-28samtools: 1.19 -> 1.19.2R. Ryantm1-2/+2
2024-01-28deeptools: fix buildRobert Schütz1-8/+28
2024-01-26Merge pull request #283816 from trofi/whisper-gcc-13-fixMaximilian Bosch1-1/+13
2024-01-26ants: 2.5.0 -> 2.5.1R. Ryantm1-2/+2
2024-01-25whisper: enable parallel buildingSergei Trofimovich1-0/+2
2024-01-25whisper: fix `gcc-13` build failureSergei Trofimovich1-1/+11
2024-01-24Merge pull request #283425 from r-ryantm/auto-update/stacksNick Cao1-2/+2
2024-01-24igv: 2.17.0 -> 2.17.1R. Ryantm1-2/+2
2024-01-24stacks: 2.65 -> 2.66R. Ryantm1-2/+2
2024-01-23Merge pull request #282666 from wegank/ebtks-refactorWeijia Wang2-6/+16
2024-01-21inormalize: fix build on darwinWeijia Wang1-0/+5
2024-01-21n3: fix build on darwinWeijia Wang1-0/+5
2024-01-21ebtks: migrate to by-name, rename from EBTKSWeijia Wang2-6/+6
2024-01-20SPAdes: fix buildsuperherointj1-0/+5
2024-01-18eggnog-mapper: 2.1.10 -> 2.1.12R. Ryantm1-2/+2
2024-01-18bowtie2: 2.5.2 -> 2.5.3R. Ryantm1-2/+2
2024-01-13Merge pull request #279509 from r-ryantm/auto-update/igvWeijia Wang1-2/+2
2024-01-11Merge pull request #278776 from TomaSajt/trimmomaticWeijia Wang1-13/+21
2024-01-08igv: 2.16.2 -> 2.17.0R. Ryantm1-2/+2
2024-01-04trimmomatic: make deterministic and clean upTomaSajt1-13/+21
2024-01-03Merge pull request #276101 from r-ryantm/auto-update/dellyWeijia Wang1-2/+2
2023-12-24Merge pull request #276231 from r-ryantm/auto-update/samtoolsFabián Heredia Montiel1-2/+2
2023-12-23seqkit: 2.6.0 -> 2.6.1R. Ryantm1-3/+3
2023-12-23samtools: 1.18 -> 1.19R. Ryantm1-2/+2
2023-12-22delly: 1.1.8 -> 1.2.6R. Ryantm1-2/+2
2023-12-21Merge pull request #274810 from r-ryantm/auto-update/messer-slimOTABI Tomoya1-2/+2
2023-12-20Merge pull request #275350 from r-ryantm/auto-update/lastJustin Bedő1-2/+2
2023-12-19last: 1518 -> 1519R. Ryantm1-2/+2
2023-12-19Merge pull request #273915 from r-ryantm/auto-update/bcftoolsOTABI Tomoya1-2/+2
2023-12-16messer-slim: 4.0.1 -> 4.1R. Ryantm1-2/+2
2023-12-15gatk: 4.4.0.0 -> 4.5.0.0R. Ryantm1-2/+2
2023-12-13bcftools: 1.18 -> 1.19R. Ryantm1-2/+2
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